It will even out with time. Especially with flat hones.
Go with the flow and use a rolling hone stroke.
Once it is shaving well you may never need to touch anything but
a 8K to 10K modern hone where the wear will be slight to maintain
the shaving edge. Once the bevel is set it should be good for a long long time.
In decades of shaving once in five or ten years take it back to 1K or coarser
and calm the smile down if you like.