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I bought Mary and my iaito from bogubag.com but I think they are temprorarily not taking orders at the moment. They've held together pretty well.
Alt of the places you can get them at should allow you customize them a bit. Such as interchanging tsuba from a different style iaito or ito color or saya.
Most people that I know who do iaido get them from swordstore.com or tozando.com though there has been some complaints about swordstore.
I recently bought a new hakama and kekogi from budo-aoi.com and they were good to work with. They have a decent selection of iaito.