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That means the problem is only cosmetic, bevels don't have to be neat, even, nor tiny, for the razor to shave, like I said earlier try 2 layers of tape and see if that helps, if not I would just...

Did you test the blade for Wobble ???

If you place it on a known flat surface and check for eveness with a light source behind it, or check it for wobble on the surafce it can tell you a lot..
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They lifted the spine off the stone, :) thus never engaging the uneven /warped spine or you applied uneven pressure when you honed it...

Either one or a combination of those could be hapenning...